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to Bioinformatics A Theoretical and Practical Approach Edited by Stephen A. Krawetz, PhD Wayne State University School of Medicine, Detroit MI and David D. Womble, PhD Wayne State University School of Medicine, Detroit, MI ~ Springer Science+ ~ Business Media, LLC © 2003 Springer Science+Business Media New York Originally published by Humana Press !ne. in 2003 Softcover reprint of the hardcover 1 st edition 2003 humanapress.com Ali rights reserved. No part of this book may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying, microfilming, recording, or otherwise without written permission from the Publisher. Ali papers, comments, opinions, conclusions, or recommendations are those of the author(s), and do not necessarily reflect the views of the publisher. This publication is printed on acid-free paper. G) ANSI Z39.48-1984 (American Standards Institute) Permanence of Paper for Printed Library Materials. Production Editor: Mark J. Breaugh. Cover design by Patricia F. Cleary and Paul A. Thiessen. Cover illustration by Paul A. Thiessen, chemicalgraphics.com.
Thie is the first definitive book on floral mimicry, providing a wider treatise on floral adaptation and plant evolution.
What are the models used in phylogenetic analysis and what exactly is involved in Bayesian evolutionary analysis using Markov chain Monte Carlo (MCMC) methods? How can you choose and apply these models, which parameterisations and priors make sense, and how can you diagnose Bayesian MCMC when things go wrong? These are just a few of the questions answered in this comprehensive overview of Bayesian approaches to phylogenetics. This practical guide: • Addresses the theoretical aspects of the field • Advises on how to prepare and perform phylogenetic analysis • Helps with interpreting analyses and visualisation of phylogenies • Describes the software architecture • Helps developing BEAST 2.2 extensions to allow these models to be extended further. With an accompanying website providing example files and tutorials (http://beast2.org/), this one-stop reference to applying the latest phylogenetic models in BEAST 2 will provide essential guidance for all users – from those using phylogenetic tools, to computational biologists and Bayesian statisticians.
Phytogeographicallyisolated from other cactihabitats by 'hostile'environments, EasternBrazil boasts a highpercentage of endemictaxa, making it a discretearea of study and of greatimportance forconservation. Thislandmark publicationincludes 77 full page colour plates and 51 colourmaps.
Piper is an economically and ecologically important genus of plant that includes a fascinating array of species for studying natural history, natural products chemistry, community ecology, and evolutionary biology. The diversification of this taxon is unique and of great importance in understanding the evolution of plants. The diversity and ecological relevance of this genus makes it an obvious candidate for ecological and evolutionary studies, but surprisingly, most research on Piper spp. to-date has focused on the more economically important plants P. nigrum (black pepper), P. methysticum (kava), and P. betle (betel leaf). While this book does address the applied techniques of studying Piper, its focus is more on Piper in its natural setting. Piper: A Model Genus for Studies of Phytochemistry, Ecology, and Evolution synthesizes existing data and provides an outline for future investigations of the chemistry, ecology, and evolution of this taxon, while examining its key themes of Piper as a model genus for ecological and evolutionary studies, the important ecological roles of Piper species in lowland wet forests, and the evolution of distinctive Piper attributes. This volume has a place in the libraries of those studying or working in the fields of ecology, evolutionary biology, natural products chemistry, invasive species biology, pharmaceutics, and ethnobotany.
A Personal Note I decided to initiate Orchid Biology: Reviews and Perspectives in about 1972 and (alone or with co-authors) started to write some of the chapters and the appendix for the volume in 1974 during a visit to the Bogor Botanical Gardens in Indonesia. Professor H. C. D. de Wit of Holland was also in Bogor at that time and when we discovered a joint interest in Rumphius he agreed to write a chapter about him. I visited Bangkok on my way home from Bogor and while there spent time with Professor Thavorn Vajrabhaya. He readily agreed to write a chapter. The rest of the chapters were solicited by mail and I had the complete manuscript on my desk in 1975. With that in hand I started to look for a publisher. Most of the publishers I contacted were not interested. Fortunately Mr James Twiggs, at that time editor of Cornell University Press, grew orchids and liked the idea. He decided to publish Orchid Biology: Reviews and Per spectives, and volume I saw the light of day in 1977. I did not know if there would be a volume II but collected manuscripts for it anyway. Fortunately volume I did well enough to justify a second book, and the series was born. It is still alive at present - 20 years, seven volumes and three publishers later. I was in the first third of my career when volume I was published.