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A clear illustration of how parallel computers can be successfully appliedto large-scale scientific computations. This book demonstrates how avariety of applications in physics, biology, mathematics and other scienceswere implemented on real parallel computers to produce new scientificresults. It investigates issues of fine-grained parallelism relevant forfuture supercomputers with particular emphasis on hypercube architecture. The authors describe how they used an experimental approach to configuredifferent massively parallel machines, design and implement basic systemsoftware, and develop algorithms for frequently used mathematicalcomputations. They also devise performance models, measure the performancecharacteristics of several computers, and create a high-performancecomputing facility based exclusively on parallel computers. By addressingall issues involved in scientific problem solving, Parallel ComputingWorks! provides valuable insight into computational science for large-scaleparallel architectures. For those in the sciences, the findings reveal theusefulness of an important experimental tool. Anyone in supercomputing andrelated computational fields will gain a new perspective on the potentialcontributions of parallelism. Includes over 30 full-color illustrations.
An overview of the most prominent contemporary parallel processing programming models, written in a unique tutorial style. With the coming of the parallel computing era, computer scientists have turned their attention to designing programming models that are suited for high-performance parallel computing and supercomputing systems. Programming parallel systems is complicated by the fact that multiple processing units are simultaneously computing and moving data. This book offers an overview of some of the most prominent parallel programming models used in high-performance computing and supercomputing systems today. The chapters describe the programming models in a unique tutorial style rather than using the formal approach taken in the research literature. The aim is to cover a wide range of parallel programming models, enabling the reader to understand what each has to offer. The book begins with a description of the Message Passing Interface (MPI), the most common parallel programming model for distributed memory computing. It goes on to cover one-sided communication models, ranging from low-level runtime libraries (GASNet, OpenSHMEM) to high-level programming models (UPC, GA, Chapel); task-oriented programming models (Charm++, ADLB, Scioto, Swift, CnC) that allow users to describe their computation and data units as tasks so that the runtime system can manage computation and data movement as necessary; and parallel programming models intended for on-node parallelism in the context of multicore architecture or attached accelerators (OpenMP, Cilk Plus, TBB, CUDA, OpenCL). The book will be a valuable resource for graduate students, researchers, and any scientist who works with data sets and large computations. Contributors Timothy Armstrong, Michael G. Burke, Ralph Butler, Bradford L. Chamberlain, Sunita Chandrasekaran, Barbara Chapman, Jeff Daily, James Dinan, Deepak Eachempati, Ian T. Foster, William D. Gropp, Paul Hargrove, Wen-mei Hwu, Nikhil Jain, Laxmikant Kale, David Kirk, Kath Knobe, Ariram Krishnamoorthy, Jeffery A. Kuehn, Alexey Kukanov, Charles E. Leiserson, Jonathan Lifflander, Ewing Lusk, Tim Mattson, Bruce Palmer, Steven C. Pieper, Stephen W. Poole, Arch D. Robison, Frank Schlimbach, Rajeev Thakur, Abhinav Vishnu, Justin M. Wozniak, Michael Wilde, Kathy Yelick, Yili Zheng
Advancements in microprocessor architecture, interconnection technology, and software development have fueled rapid growth in parallel and distributed computing. However, this development is only of practical benefit if it is accompanied by progress in the design, analysis and programming of parallel algorithms. This concise textbook provides, in one place, three mainstream parallelization approaches, Open MPP, MPI and OpenCL, for multicore computers, interconnected computers and graphical processing units. An overview of practical parallel computing and principles will enable the reader to design efficient parallel programs for solving various computational problems on state-of-the-art personal computers and computing clusters. Topics covered range from parallel algorithms, programming tools, OpenMP, MPI and OpenCL, followed by experimental measurements of parallel programs’ run-times, and by engineering analysis of obtained results for improved parallel execution performances. Many examples and exercises support the exposition.
A complete source of information on almost all aspects of parallel computing from introduction, to architectures, to programming paradigms, to algorithms, to programming standards. It covers traditional Computer Science algorithms, scientific computing algorithms and data intensive algorithms.
Parallel Computations focuses on parallel computation, with emphasis on algorithms used in a variety of numerical and physical applications and for many different types of parallel computers. Topics covered range from vectorization of fast Fourier transforms (FFTs) and of the incomplete Cholesky conjugate gradient (ICCG) algorithm on the Cray-1 to calculation of table lookups and piecewise functions. Single tridiagonal linear systems and vectorized computation of reactive flow are also discussed. Comprised of 13 chapters, this volume begins by classifying parallel computers and describing techniques for performing matrix operations on them. The reader is then introduced to FFTs and the tridiagonal linear system as well as the ICCG method. Different versions of the conjugate gradient method for solving the time-dependent diffusion equation are considered. Subsequent chapters deal with two- and three-dimensional fluid flow calculations, paying particular attention to the principal issues in designing efficient numerical methods for hydrodynamic calculations; the decisions that a numerical modeler must make to optimize chemically reactive flow simulations; and how to handle disk-to-core data transfer and storage allocation for the solution of the implicit equations for three-dimensional flows. The book also describes the time-split finite difference scheme for solving the two-dimensional Navier-Stokes equation for flows through slotted nozzles. Finally, the large-scale stimulation of plasmas, as carried out on a small computer with an array processor, is discussed. This monograph should be of interest to specialists in computer science.
Motivation It is now possible to build powerful single-processor and multiprocessor systems and use them efficiently for data processing, which has seen an explosive ex pansion in many areas of computer science and engineering. One approach to meeting the performance requirements of the applications has been to utilize the most powerful single-processor system that is available. When such a system does not provide the performance requirements, pipelined and parallel process ing structures can be employed. The concept of parallel processing is a depar ture from sequential processing. In sequential computation one processor is in volved and performs one operation at a time. On the other hand, in parallel computation several processors cooperate to solve a problem, which reduces computing time because several operations can be carried out simultaneously. Using several processors that work together on a given computation illustrates a new paradigm in computer problem solving which is completely different from sequential processing. From the practical point of view, this provides sufficient justification to investigate the concept of parallel processing and related issues, such as parallel algorithms. Parallel processing involves utilizing several factors, such as parallel architectures, parallel algorithms, parallel programming lan guages and performance analysis, which are strongly interrelated. In general, four steps are involved in performing a computational problem in parallel. The first step is to understand the nature of computations in the specific application domain.
Mathematics of Computing -- Parallelism.
What does Google's management of billions of Web pages have in common with analysis of a genome with billions of nucleotides? Both apply methods that coordinate many processors to accomplish a single task. From mining genomes to the World Wide Web, from modeling financial markets to global weather patterns, parallel computing enables computations that would otherwise be impractical if not impossible with sequential approaches alone. Its fundamental role as an enabler of simulations and data analysis continues an advance in a wide range of application areas. Scientific Parallel Computing is the first textbook to integrate all the fundamentals of parallel computing in a single volume while also providing a basis for a deeper understanding of the subject. Designed for graduate and advanced undergraduate courses in the sciences and in engineering, computer science, and mathematics, it focuses on the three key areas of algorithms, architecture, languages, and their crucial synthesis in performance. The book's computational examples, whose math prerequisites are not beyond the level of advanced calculus, derive from a breadth of topics in scientific and engineering simulation and data analysis. The programming exercises presented early in the book are designed to bring students up to speed quickly, while the book later develops projects challenging enough to guide students toward research questions in the field. The new paradigm of cluster computing is fully addressed. A supporting web site provides access to all the codes and software mentioned in the book, and offers topical information on popular parallel computing systems. Integrates all the fundamentals of parallel computing essential for today's high-performance requirements Ideal for graduate and advanced undergraduate students in the sciences and in engineering, computer science, and mathematics Extensive programming and theoretical exercises enable students to write parallel codes quickly More challenging projects later in the book introduce research questions New paradigm of cluster computing fully addressed Supporting web site provides access to all the codes and software mentioned in the book
There is a software gap between the hardware potential and the performance that can be attained using today's software parallel program development tools. The tools need manual intervention by the programmer to parallelize the code. Programming a parallel computer requires closely studying the target algorithm or application, more so than in the traditional sequential programming we have all learned. The programmer must be aware of the communication and data dependencies of the algorithm or application. This book provides the techniques to explore the possible ways to program a parallel computer for a given application.
Numerical algorithms, modern programming techniques, and parallel computing are often taught serially across different courses and different textbooks. The need to integrate concepts and tools usually comes only in employment or in research - after the courses are concluded - forcing the student to synthesise what is perceived to be three independent subfields into one. This book provides a seamless approach to stimulate the student simultaneously through the eyes of multiple disciplines, leading to enhanced understanding of scientific computing as a whole. The book includes both basic as well as advanced topics and places equal emphasis on the discretization of partial differential equations and on solvers. Some of the advanced topics include wavelets, high-order methods, non-symmetric systems, and parallelization of sparse systems. The material covered is suited to students from engineering, computer science, physics and mathematics.