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This book explores visualization and imputation techniques for missing values and presents practical applications using the statistical software R. It explains the concepts of common imputation methods with a focus on visualization, description of data problems and practical solutions using R, including modern methods of robust imputation, imputation based on deep learning and imputation for complex data. By describing the advantages, disadvantages and pitfalls of each method, the book presents a clear picture of which imputation methods are applicable given a specific data set at hand. The material covered includes the pre-analysis of data, visualization of missing values in incomplete data, single and multiple imputation, deductive imputation and outlier replacement, model-based methods including methods based on robust estimates, non-linear methods such as tree-based and deep learning methods, imputation of compositional data, imputation quality evaluation from visual diagnostics to precision measures, coverage rates and prediction performance and a description of different model- and design-based simulation designs for the evaluation. The book also features a topic-focused introduction to R and R code is provided in each chapter to explain the practical application of the described methodology. Addressed to researchers, practitioners and students who work with incomplete data, the book offers an introduction to the subject as well as a discussion of recent developments in the field. It is suitable for beginners to the topic and advanced readers alike.
Missing data pose challenges to real-life data analysis. Simple ad-hoc fixes, like deletion or mean imputation, only work under highly restrictive conditions, which are often not met in practice. Multiple imputation replaces each missing value by multiple plausible values. The variability between these replacements reflects our ignorance of the true (but missing) value. Each of the completed data set is then analyzed by standard methods, and the results are pooled to obtain unbiased estimates with correct confidence intervals. Multiple imputation is a general approach that also inspires novel solutions to old problems by reformulating the task at hand as a missing-data problem. This is the second edition of a popular book on multiple imputation, focused on explaining the application of methods through detailed worked examples using the MICE package as developed by the author. This new edition incorporates the recent developments in this fast-moving field. This class-tested book avoids mathematical and technical details as much as possible: formulas are accompanied by verbal statements that explain the formula in accessible terms. The book sharpens the reader’s intuition on how to think about missing data, and provides all the tools needed to execute a well-grounded quantitative analysis in the presence of missing data.
The process of developing predictive models includes many stages. Most resources focus on the modeling algorithms but neglect other critical aspects of the modeling process. This book describes techniques for finding the best representations of predictors for modeling and for nding the best subset of predictors for improving model performance. A variety of example data sets are used to illustrate the techniques along with R programs for reproducing the results.
This book is about using interactive and dynamic plots on a computer screen as part of data exploration and modeling, both alone and as a partner with static graphics and non-graphical computational methods. The area of int- active and dynamic data visualization emerged within statistics as part of research on exploratory data analysis in the late 1960s, and it remains an active subject of research today, as its use in practice continues to grow. It now makes substantial contributions within computer science as well, as part of the growing ?elds of information visualization and data mining, especially visual data mining. The material in this book includes: • An introduction to data visualization, explaining how it di?ers from other types of visualization. • Adescriptionofourtoolboxofinteractiveanddynamicgraphicalmethods. • An approach for exploring missing values in data. • An explanation of the use of these tools in cluster analysis and supervised classi?cation. • An overview of additional material available on the web. • A description of the data used in the analyses and exercises. The book’s examples use the software R and GGobi. R (Ihaka & Gent- man 1996, RDevelopment CoreTeam2006) isafreesoftware environment for statistical computing and graphics; it is most often used from the command line, provides a wide variety of statistical methods, and includes high–quality staticgraphics.RaroseintheStatisticsDepartmentoftheUniversityofAu- land and is now developed and maintained by a global collaborative e?ort.
Papers from a workshop held at Cornell University, Oct. 1989, and sponsored by Cornell's Mathematical Sciences Institute. Annotation copyright Book News, Inc. Portland, Or.
Sooner or later anyone who does statistical analysis runs into problems with missing data in which information for some variables is missing for some cases. Why is this a problem? Because most statistical methods presume that every case has information on all the variables to be included in the analysis. Using numerous examples and practical tips, this book offers a nontechnical explanation of the standard methods for missing data (such as listwise or casewise deletion) as well as two newer (and, better) methods, maximum likelihood and multiple imputation. Anyone who has been relying on ad-hoc methods that are statistically inefficient or biased will find this book a welcome and accessible solution to their problems with handling missing data.
A visually intuitive approach to statistical data analysis Visual Statistics brings the most complex and advanced statistical methods within reach of those with little statistical training by using animated graphics of the data. Using ViSta: The Visual Statistics System-developed by Forrest Young and Pedro Valero-Mora and available free of charge on the Internet-students can easily create fully interactive visualizations from relevant mathematical statistics, promoting perceptual and cognitive understanding of the data's story. An emphasis is placed on a paradigm for understanding data that is visual, intuitive, geometric, and active, rather than one that relies on convoluted logic, heavy mathematics, systems of algebraic equations, or passive acceptance of results. A companion Web site complements the book by further demonstrating the concept of creating interactive and dynamic graphics. The book provides users with the opportunity to view the graphics in a dynamic way by illustrating how to analyze statistical data and explore the concepts of visual statistics. Visual Statistics addresses and features the following topics: * Why use dynamic graphics? * A history of statistical graphics * Visual statistics and the graphical user interface * Visual statistics and the scientific method * Character-based statistical interface objects * Graphics-based statistical interfaces * Visualization for exploring univariate data This is an excellent textbook for undergraduate courses in data analysis and regression, for students majoring or minoring in statistics, mathematics, science, engineering, and computer science, as well as for graduate-level courses in mathematics. The book is also ideal as a reference/self-study guide for engineers, scientists, and mathematicians. With contributions by highly regarded professionals in the field, Visual Statistics not only improves a student's understanding of statistics, but also builds confidence to overcome problems that may have previously been intimidating.
Statistical Rethinking: A Bayesian Course with Examples in R and Stan builds readers’ knowledge of and confidence in statistical modeling. Reflecting the need for even minor programming in today’s model-based statistics, the book pushes readers to perform step-by-step calculations that are usually automated. This unique computational approach ensures that readers understand enough of the details to make reasonable choices and interpretations in their own modeling work. The text presents generalized linear multilevel models from a Bayesian perspective, relying on a simple logical interpretation of Bayesian probability and maximum entropy. It covers from the basics of regression to multilevel models. The author also discusses measurement error, missing data, and Gaussian process models for spatial and network autocorrelation. By using complete R code examples throughout, this book provides a practical foundation for performing statistical inference. Designed for both PhD students and seasoned professionals in the natural and social sciences, it prepares them for more advanced or specialized statistical modeling. Web Resource The book is accompanied by an R package (rethinking) that is available on the author’s website and GitHub. The two core functions (map and map2stan) of this package allow a variety of statistical models to be constructed from standard model formulas.
An up-to-date, comprehensive treatment of a classic text on missing data in statistics The topic of missing data has gained considerable attention in recent decades. This new edition by two acknowledged experts on the subject offers an up-to-date account of practical methodology for handling missing data problems. Blending theory and application, authors Roderick Little and Donald Rubin review historical approaches to the subject and describe simple methods for multivariate analysis with missing values. They then provide a coherent theory for analysis of problems based on likelihoods derived from statistical models for the data and the missing data mechanism, and then they apply the theory to a wide range of important missing data problems. Statistical Analysis with Missing Data, Third Edition starts by introducing readers to the subject and approaches toward solving it. It looks at the patterns and mechanisms that create the missing data, as well as a taxonomy of missing data. It then goes on to examine missing data in experiments, before discussing complete-case and available-case analysis, including weighting methods. The new edition expands its coverage to include recent work on topics such as nonresponse in sample surveys, causal inference, diagnostic methods, and sensitivity analysis, among a host of other topics. An updated “classic” written by renowned authorities on the subject Features over 150 exercises (including many new ones) Covers recent work on important methods like multiple imputation, robust alternatives to weighting, and Bayesian methods Revises previous topics based on past student feedback and class experience Contains an updated and expanded bibliography The authors were awarded The Karl Pearson Prize in 2017 by the International Statistical Institute, for a research contribution that has had profound influence on statistical theory, methodology or applications. Their work "has been no less than defining and transforming." (ISI) Statistical Analysis with Missing Data, Third Edition is an ideal textbook for upper undergraduate and/or beginning graduate level students of the subject. It is also an excellent source of information for applied statisticians and practitioners in government and industry.
This book presents the statistical analysis of compositional data using the log-ratio approach. It includes a wide range of classical and robust statistical methods adapted for compositional data analysis, such as supervised and unsupervised methods like PCA, correlation analysis, classification and regression. In addition, it considers special data structures like high-dimensional compositions and compositional tables. The methodology introduced is also frequently compared to methods which ignore the specific nature of compositional data. It focuses on practical aspects of compositional data analysis rather than on detailed theoretical derivations, thus issues like graphical visualization and preprocessing (treatment of missing values, zeros, outliers and similar artifacts) form an important part of the book. Since it is primarily intended for researchers and students from applied fields like geochemistry, chemometrics, biology and natural sciences, economics, and social sciences, all the proposed methods are accompanied by worked-out examples in R using the package robCompositions.