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This textbook for courses on function data analysis and shape data analysis describes how to define, compare, and mathematically represent shapes, with a focus on statistical modeling and inference. It is aimed at graduate students in analysis in statistics, engineering, applied mathematics, neuroscience, biology, bioinformatics, and other related areas. The interdisciplinary nature of the broad range of ideas covered—from introductory theory to algorithmic implementations and some statistical case studies—is meant to familiarize graduate students with an array of tools that are relevant in developing computational solutions for shape and related analyses. These tools, gleaned from geometry, algebra, statistics, and computational science, are traditionally scattered across different courses, departments, and disciplines; Functional and Shape Data Analysis offers a unified, comprehensive solution by integrating the registration problem into shape analysis, better preparing graduate students for handling future scientific challenges. Recently, a data-driven and application-oriented focus on shape analysis has been trending. This text offers a self-contained treatment of this new generation of methods in shape analysis of curves. Its main focus is shape analysis of functions and curves—in one, two, and higher dimensions—both closed and open. It develops elegant Riemannian frameworks that provide both quantification of shape differences and registration of curves at the same time. Additionally, these methods are used for statistically summarizing given curve data, performing dimension reduction, and modeling observed variability. It is recommended that the reader have a background in calculus, linear algebra, numerical analysis, and computation.
A thoroughly revised and updated edition of this introduction to modern statistical methods for shape analysis Shape analysis is an important tool in the many disciplines where objects are compared using geometrical features. Examples include comparing brain shape in schizophrenia; investigating protein molecules in bioinformatics; and describing growth of organisms in biology. This book is a significant update of the highly-regarded `Statistical Shape Analysis’ by the same authors. The new edition lays the foundations of landmark shape analysis, including geometrical concepts and statistical techniques, and extends to include analysis of curves, surfaces, images and other types of object data. Key definitions and concepts are discussed throughout, and the relative merits of different approaches are presented. The authors have included substantial new material on recent statistical developments and offer numerous examples throughout the text. Concepts are introduced in an accessible manner, while retaining sufficient detail for more specialist statisticians to appreciate the challenges and opportunities of this new field. Computer code has been included for instructional use, along with exercises to enable readers to implement the applications themselves in R and to follow the key ideas by hands-on analysis. Statistical Shape Analysis: with Applications in R will offer a valuable introduction to this fast-moving research area for statisticians and other applied scientists working in diverse areas, including archaeology, bioinformatics, biology, chemistry, computer science, medicine, morphometics and image analysis .
In general terms, the shape of an object, data set, or image can be de fined as the total of all information that is invariant under translations, rotations, and isotropic rescalings. Thus two objects can be said to have the same shape if they are similar in the sense of Euclidean geometry. For example, all equilateral triangles have the same shape, and so do all cubes. In applications, bodies rarely have exactly the same shape within measure ment error. In such cases the variation in shape can often be the subject of statistical analysis. The last decade has seen a considerable growth in interest in the statis tical theory of shape. This has been the result of a synthesis of a number of different areas and a recognition that there is considerable common ground among these areas in their study of shape variation. Despite this synthesis of disciplines, there are several different schools of statistical shape analysis. One of these, the Kendall school of shape analysis, uses a variety of mathe matical tools from differential geometry and probability, and is the subject of this book. The book does not assume a particularly strong background by the reader in these subjects, and so a brief introduction is provided to each of these topics. Anyone who is unfamiliar with this material is advised to consult a more complete reference. As the literature on these subjects is vast, the introductory sections can be used as a brief guide to the literature.
The subject of pattern analysis and recognition pervades many aspects of our daily lives, including user authentication in banking, object retrieval from databases in the consumer sector, and the omnipresent surveillance and security measures around sensitive areas. Shape analysis, a fundamental building block in many approaches to these applications, is also used in statistics, biomedical applications (Magnetic Resonance Imaging), and many other related disciplines. With contributions from some of the leading experts and pioneers in the field, this self-contained, unified volume is the first comprehensive treatment of theory, methods, and algorithms available in a single resource. Developments are discussed from a rapidly increasing number of research papers in diverse fields, including the mathematical and physical sciences, engineering, and medicine.
Natural scientists perceive and classify organisms primarily on the basis of their appearance and structure- their form, defined as that characteristic remaining invariant after translation, rotation, and possibly reflection of the object. The quantitative study of form and form change comprises the field of morphometrics. For morphometrics to succeed, it needs techniques that not only satisfy mathematical and statistical rigor but also attend to the scientific issues. An Invariant Approach to the Statistical Analysis of Shapes results from a long and fruitful collaboration between a mathematical statistician and a biologist. Together they have developed a methodology that addresses the importance of scientific relevance, biological variability, and invariance of the statistical and scientific inferences with respect to the arbitrary choice of the coordinate system. They present the history and foundations of morphometrics, discuss the various kinds of data used in the analysis of form, and provide justification for choosing landmark coordinates as a preferred data type. They describe the statistical models used to represent intra-population variability of landmark data and show that arbitrary translation, rotation, and reflection of the objects introduce infinitely many nuisance parameters. The most fundamental part of morphometrics-comparison of forms-receives in-depth treatment, as does the study of growth and growth patterns, classification, clustering, and asymmetry. Morphometrics has only recently begun to consider the invariance principle and its implications for the study of biological form. With the advantage of dual perspectives, An Invariant Approach to the Statistical Analysis of Shapes stands as a unique and important work that brings a decade's worth of innovative methods, observations, and insights to an audience of both statisticians and biologists.
A thoroughly revised and updated edition of this introduction to modern statistical methods for shape analysis Shape analysis is an important tool in the many disciplines where objects are compared using geometrical features. Examples include comparing brain shape in schizophrenia; investigating protein molecules in bioinformatics; and describing growth of organisms in biology. This book is a significant update of the highly-regarded Statistical Shape Analysis by the same authors. The new edition lays the foundations of landmark shape analysis, including geometrical concepts and statistical techniques, and extends to include analysis of curves, surfaces, images and other types of object data. Key definitions and concepts are discussed throughout, and the relative merits of different approaches are presented. The authors have included substantial new material on recent statistical developments and offer numerous examples throughout the text. Concepts are introduced in an accessible manner, while retaining sufficient detail for more specialist statisticians to appreciate the challenges and opportunities of this new field. Computer code has been included for instructional use, along with exercises to enable readers to implement the applications themselves in R and to follow the key ideas by hands-on analysis. Offers a detailed yet accessible treatment of statistical methods for shape analysis Includes numerous examples and applications from many disciplines Provides R code for implementing the examples Covers a wide variety of recent developments in shape analysis Shape Analysis, with Applications in R will offer a valuable introduction to this fast-moving research area for statisticians and other applied scientists working in diverse areas, including archaeology, bioinformatics, biology, chemistry, computer science, medicine, morphometics and image analysis.
Shape and Shape Theory D. G. Kendall Churchill College, University of Cambridge, UK D. Barden Girton College, University of Cambridge, UK T. K. Carne King's College, University of Cambridge, UK H. Le University of Nottingham, UK The statistical theory of shape is a relatively new topic and is generating a great deal of interest and comment by statisticians, engineers and computer scientists. Mathematically, 'shape' is the geometrical information required to describe an object when location, scale and rotational effects are removed. The theory was pioneered by Professor David Kendall to solve practical problems concerning shape. This text presents an elegant account of the theory of shape that has evolved from Kendall's work. Features include: * A comprehensive account of Kendall's shape spaces * A variety of topological and geometric invariants of these spaces * Emphasis on the mathematical aspects of shape analysis * Coverage of the mathematical issues for a wide range of applications The early chapters provide all the necessary background information, including the history and applications of shape theory. The authors then go on to analyse the topic, in brilliant detail, in a variety of different shape spaces. Kendall's own procedures for visualising distributions of shapes and shape processes are covered at length. Implications from other branches of mathematics are explored, along with more advanced applications, incorporating statistics and stochastic analysis. Applied statisticians, applied mathematicians, engineers and computer scientists working and researching in the fields of archaeology, astronomy, biology, geography and physical chemistry will find this book of great benefit. The theories presented are used today in a wide range of subjects from archaeology through to physics, and will provide fascinating reading to anyone engaged in such research. Visit our web page! http://www.wiley.com/
WILEY-INTERSCIENCE PAPERBACK SERIES The Wiley-Interscience Paperback Series consists of selected books that have been made more accessible to consumers in an effort to increase global appeal and general circulation. With these new unabridged softcover volumes, Wiley hopes to extend the lives of these works by making them available to future generations of statisticians, mathematicians, and scientists. "Exploring Data Tables, Trends, and Shapes (EDTTS) was written as a companion volume to the same editors' book, Understanding Robust and Exploratory Data Analysis (UREDA). Whereas UREDA is a collection of exploratory and resistant methods of estimation and display, EDTTS goes a step further, describing multivariate and more complicated techniques . . . I feel that the authors have made a very significant contribution in the area of multivariate nonparametric methods. This book [is] a valuable source of reference to researchers in the area." —Technometrics "This edited volume . . . provides an important theoretical and philosophical extension to the currently popular statistical area of Exploratory Data Analysis, which seeks to reveal structure, or simple descriptions, in data . . . It is . . . an important reference volume which any statistical library should consider seriously." —The Statistician This newly available and affordably priced paperback version of Exploring Data Tables, Trends, and Shapes presents major advances in exploratory data analysis and robust regression methods and explains the techniques, relating them to classical methods. The book addresses the role of exploratory and robust techniques in the overall data-analytic enterprise, and it also presents new methods such as fitting by organized comparisons using the square combining table and identifying extreme cells in a sizable contingency table with probabilistic and exploratory approaches. The book features a chapter on using robust regression in less technical language than available elsewhere. Conceptual support for each technique is also provided.
Presents the latest groundbreaking theoretical foundation to shape optimization in a form accessible to mathematicians, scientists and engineers.
There has been an increasing interest in the statistical analysis of geometric objects and structures in many branches of science and engineering in recent years. The aim of this book is to present these statistical methods for practical use by non-mathematicians by outlining the mathematical ideas rather than concentrating on detailed proofs. The clarity of exposition ensures that the book will be a valuable resource for researchers and practitioners in many scientific disciplines who wish to use these methods in their work. In particular, the book is suited to materials scientists, geologists, environmental scientists, and biologists.