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This book provides a general introduction to Sequential Monte Carlo (SMC) methods, also known as particle filters. These methods have become a staple for the sequential analysis of data in such diverse fields as signal processing, epidemiology, machine learning, population ecology, quantitative finance, and robotics. The coverage is comprehensive, ranging from the underlying theory to computational implementation, methodology, and diverse applications in various areas of science. This is achieved by describing SMC algorithms as particular cases of a general framework, which involves concepts such as Feynman-Kac distributions, and tools such as importance sampling and resampling. This general framework is used consistently throughout the book. Extensive coverage is provided on sequential learning (filtering, smoothing) of state-space (hidden Markov) models, as this remains an important application of SMC methods. More recent applications, such as parameter estimation of these models (through e.g. particle Markov chain Monte Carlo techniques) and the simulation of challenging probability distributions (in e.g. Bayesian inference or rare-event problems), are also discussed. The book may be used either as a graduate text on Sequential Monte Carlo methods and state-space modeling, or as a general reference work on the area. Each chapter includes a set of exercises for self-study, a comprehensive bibliography, and a “Python corner,” which discusses the practical implementation of the methods covered. In addition, the book comes with an open source Python library, which implements all the algorithms described in the book, and contains all the programs that were used to perform the numerical experiments.
The first unified treatment of time series modelling techniques spanning machine learning, statistics, engineering and computer science.
Monte Carlo methods are revolutionizing the on-line analysis of data in many fileds. They have made it possible to solve numerically many complex, non-standard problems that were previously intractable. This book presents the first comprehensive treatment of these techniques.
A comprehensive resource that draws a balance between theory and applications of nonlinear time series analysis Nonlinear Time Series Analysis offers an important guide to both parametric and nonparametric methods, nonlinear state-space models, and Bayesian as well as classical approaches to nonlinear time series analysis. The authors—noted experts in the field—explore the advantages and limitations of the nonlinear models and methods and review the improvements upon linear time series models. The need for this book is based on the recent developments in nonlinear time series analysis, statistical learning, dynamic systems and advanced computational methods. Parametric and nonparametric methods and nonlinear and non-Gaussian state space models provide a much wider range of tools for time series analysis. In addition, advances in computing and data collection have made available large data sets and high-frequency data. These new data make it not only feasible, but also necessary to take into consideration the nonlinearity embedded in most real-world time series. This vital guide: • Offers research developed by leading scholars of time series analysis • Presents R commands making it possible to reproduce all the analyses included in the text • Contains real-world examples throughout the book • Recommends exercises to test understanding of material presented • Includes an instructor solutions manual and companion website Written for students, researchers, and practitioners who are interested in exploring nonlinearity in time series, Nonlinear Time Series Analysis offers a comprehensive text that explores the advantages and limitations of the nonlinear models and methods and demonstrates the improvements upon linear time series models.
In these notes, we introduce particle filtering as a recursive importance sampling method that approximates the minimum-mean-square-error (MMSE) estimate of a sequence of hidden state vectors in scenarios where the joint probability distribution of the states and the observations is non-Gaussian and, therefore, closed-form analytical expressions for the MMSE estimate are generally unavailable. We begin the notes with a review of Bayesian approaches to static (i.e., time-invariant) parameter estimation. In the sequel, we describe the solution to the problem of sequential state estimation in linear, Gaussian dynamic models, which corresponds to the well-known Kalman (or Kalman-Bucy) filter. Finally, we move to the general nonlinear, non-Gaussian stochastic filtering problem and present particle filtering as a sequential Monte Carlo approach to solve that problem in a statistically optimal way. We review several techniques to improve the performance of particle filters, including importance function optimization, particle resampling, Markov Chain Monte Carlo move steps, auxiliary particle filtering, and regularized particle filtering. We also discuss Rao-Blackwellized particle filtering as a technique that is particularly well-suited for many relevant applications such as fault detection and inertial navigation. Finally, we conclude the notes with a discussion on the emerging topic of distributed particle filtering using multiple processors located at remote nodes in a sensor network. Throughout the notes, we often assume a more general framework than in most introductory textbooks by allowing either the observation model or the hidden state dynamic model to include unknown parameters. In a fully Bayesian fashion, we treat those unknown parameters also as random variables. Using suitable dynamic conjugate priors, that approach can be applied then to perform joint state and parameter estimation.
Markov Chain Monte Carlo (MCMC) originated in statistical physics, but has spilled over into various application areas, leading to a corresponding variety of techniques and methods. That variety stimulates new ideas and developments from many different places, and there is much to be gained from cross-fertilization. This book presents five expository essays by leaders in the field, drawing from perspectives in physics, statistics and genetics, and showing how different aspects of MCMC come to the fore in different contexts. The essays derive from tutorial lectures at an interdisciplinary program at the Institute for Mathematical Sciences, Singapore, which exploited the exciting ways in which MCMC spreads across different disciplines.
Data assimilation is the process of estimating the state of dynamic systems (linear or nonlinear, Gaussian or non-Gaussian) as accurately as possible from noisy observational data. Although the Three Dimensional Variational (3D-VAR) methods, Four Dimensional Variational (4D-VAR) methods and Ensemble Kalman filter (EnKF) methods are widely used and effective for linear and Gaussian dynamics, new methods of data assimilation are required for the general situation, that is, nonlinear non-Gaussian dynamics. General Bayesian recursive estimation theory is reviewed in this thesis. The Bayesian estimation approach provides a rather general and powerful framework for handling nonlinear, non-Gaussian, as well as linear, Gaussian estimation problems. Despite a general solution to the nonlinear estimation problem, there is no closed-form solution in the general case. Therefore, approximate techniques have to be employed. In this thesis, the sequential Monte Carlo (SMC) methods, commonly referred to as the particle filter, is presented to tackle non-linear, non-Gaussian estimation problems. In this thesis, we use the SMC methods only for the nonlinear state estimation problem, however, it can also be used for the nonlinear parameter estimation problem. In order to demonstrate the new methods in the general nonlinear non-Gaussian case, we compare Sequential Monte Carlo (SMC) methods with the Ensemble Kalman Filter (EnKF) by performing data assimilation in nonlinear and non-Gaussian dynamic systems. The models used in this study are referred to as state-space models. The Lorenz 1963 and 1966 models serve as test beds for examining the properties of these assimilation methods when used in highly nonlinear dynamics. The application of Sequential Monte Carlo methods to different fixed parameters in dynamic models is considered. Four different scenarios in the Lorenz 1063 [sic] model and three different scenarios in the Lorenz 1996 model are designed in this study for both the SMC methods and EnKF method with different filter size from 50 to 1000. The comparison results show that the SMC methods have theoretical advantages and also work well with highly nonlinear Lorenz models for state estimation in practice. Although Ensemble Kalman Filter (EnKF) computes only the mean and the variance of the state, which is based on linear state-space models with Gaussian noise, the SMC methods do not outperform EnKF in practical applications as we expected in theoretical insights. The main drawback of Sequential Monte Carlo (SMC) methods is that it requires much computational power, which is the obstacle to extend SMC methods to high dimensional atmospheric and oceanic models. We try to interpret the reason why the SMC data assimilation result is similar to the EnKF data assimilation result in these experiments and discuss the potential future application for high dimensional realistic atmospheric and oceanic models in this thesis.