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Population genomics has revolutionized various disciplines of biology including population, evolutionary, ecological and conservation genetics, plant and animal breeding, human health, medicine and pharmacology by allowing to address novel and long-standing questions with unprecedented power and accuracy. It employs large-scale or genome-wide genetic information and bioinformatics to address various fundamental and applied aspects in biology and related disciplines, and provides a comprehensive genome-wide perspective and new insights that were not possible before. These advances have become possible due to the development of new and low-cost sequencing and genotyping technologies and novel statistical approaches and software, bioinformatics tools, and models. Population genomics is tremendously advancing our understanding the roles of evolutionary processes, such as mutation, genetic drift, gene flow, and natural selection, in shaping up genetic variation at individual loci and across the genome and populations; improving the assessment of population genetic parameters or processes such as adaptive evolution, effective population size, gene flow, admixture, inbreeding and outbreeding depression, demography, and biogeography; resolving evolutionary histories and phylogenetic relationships of extant, ancient and extinct species; understanding the genomic basis of fitness, adaptation, speciation, complex ecological and economically important traits, and disease and insect resistance; facilitating forensics, genetic medicine and pharmacology; delineating conservation genetic units; and understanding the genetic effects of resource management practices, and assisting conservation and sustainable management of genetic resources. This Population Genomics book discusses the concepts, approaches, applications and promises of population genomics in addressing most of the above fundamental and applied crucial aspects in a variety of organisms from microorganisms to humans. The book provides insights into a range of emerging population genomics topics including population epigenomics, landscape genomics, seascape genomics, paleogenomics, ecological and evolutionary genomics, biogeography, demography, speciation, admixture, colonization and invasion, genomic selection, and plant and animal domestication. This book fills a vacuum in the field and is expected to become a primary reference in Population Genomics world-wide.
Population genomics has provided unprecedented opportunities to unravel the mysteries of marine organisms in the oceans' depths. The world's oceans, which make up 70% of our planet, encompass diverse habitats and host numerous unexplored populations and species. Population genomics studies of marine organisms are rapidly emerging and have the potential to transform our understanding of marine populations, species, and ecosystems, providing insights into how these organisms are evolving and how they respond to different stimuli and environments. This knowledge is critical for understanding the fundamental aspects of marine life, how marine organisms will respond to environmental changes, and how we can better protect and preserve marine biodiversity and resources. This book brings together leading experts in the field to address critical aspects of fundamental and applied research in marine species and share their research and insights crucial for understanding marine ecosystem diversity and function. It also discusses the challenges, opportunities and future perspectives of marine population genomics.
International Workshop on Marine Genetics - Rio 98
In 1966 Congress passed the National Sea Grant College Program Act to promote marine research, education, and extension services in institutions along the nation's ocean and Great Lakes coasts. In Maryland a Sea Grant Program -- a partnership among federal and state governments, universities, and industries -- began in 1977, and in 1982 the University of Maryland was named the nation's seventeenth Sea Grant College. The Maryland Sea Grant College focuses its efforts on the Chesapeake Bay, with emphasis on the marine concerns of fisheries, seafood technology, and environmental quality. The first comprehensive review of the biology of the eastern oyster in more than thirty years. The twenty-one chapters synthesize every aspect of oyster biology -- for instance, general anatomy, physiology, the circulatory system, reproduction, genetics, diseases -- and issues related to management and aquaculture.
Geographic Variation, Speciation and Clines explores the origins and development of geographic variation, divergence, and speciation. In particular it is concerned with genetic divergence as it is usually found on continents, among groups of populations isolated only by distance. Although earlier writers on this topic considered the effects of geography and dispersal, intense geographic differentiation and speciation were thought to require complete isolation. Professor Endler shows how geographic differentiation and speciation may develop in spite of continuous gene flow. Following a review of the diverse and scattered literature on gene flow and population differentiation, the author discusses the relationships among gene flow, dispersal, and migration. He then summarizes the factors which limit the geographic extent of gene flow, and those which allow steep clines to develop in the absence of barriers to gene flow. His analysis draws on examples from the field, experiments, and single- and multiple-locus models. The mechanism and conditions for parapatric speciation are presented: steepening clines, development into hybrid zones, and the evolution of sexual isolation. In the final chapter the author considers the interpretation of natural clines and the associated geographic patterns of subspecies and species.
Marine Bivalve Molluscs Marine Bivalve Molluscs is a comprehensive and thoroughly updated Second Edition of Bivalve Molluscs, covering all major aspects of this important class of invertebrates. As well as being an important class biologically and ecologically, many of the bivalves are fished and cultured commercially (e.g. mussels, oysters, scallops and clams) in a multi-billion dollar worldwide industry. Elizabeth Gosling has written a landmark book that will stand for many years as the standard work on the subject. Chapters in Marine Bivalve Molluscs cover morphology, ecology, feeding, reproduction, settlement and recruitment, growth, physiology, fisheries, aquaculture, genetics, diseases and parasites, and public health issues. A full understanding of many of these aspects is vital for all those working in bivalve fisheries and culture. An essential purchase for anyone concerned with this important class of animals, copies of Marine Bivalve Molluscs should be on the shelves of biologists, ecologists, environmental scientists, fisheries scientists and personnel within the aquaculture industry. Copies of the book should be available in all libraries and research establishments where these subjects are studied or taught. REVIEWS OF THE FIRST EDITION An admirable achievement...a valuable addition to marine sciences libraries everywhere. The back cover of this book says that it is a landmark text that will stand for many years as the standard work on this subject. I can only agree with this sentiment. ~ Aquaculture A welcome addition to the literature and provides the reader with a comprehensive overview of biological and environmental factors that affect and control both natural populations of marine bivalves and culture operations. ~ Aquaculture International The author has done an admirable job in compiling a wealth of information into a readable text. ~ Transactions of the American Fisheries Society Will serve well as a description of much of both the experimental biology and the aquaculture of bivalves. ~ Journal of Experimental Marine Biology and Ecology Provides excellent reviews of all major aspects...an extremely important reference for anyone engaged in bivalve research, fisheries management, and aquaculture. ~ Quarterly Review of Biology The book is very readable, in an easy style. It is well illustrated and there is a wealth of data and statistics presented. ~ Bulletin of the Malacological Society of London
Examination of corals and reef-associated organisms which endure in extreme coral reef environments is challenging our understanding of the conditions that organisms can survive under. By studying individuals naturally adapted to unfavorable conditions, we begin to better understand the important traits required to survive rapid environmental and climate change. This Research Topic, comprising reviews, and original research articles, demonstrates the current state of knowledge regarding the diversity of extreme coral habitats, the species that have been studied, and the knowledge to-date on the mechanisms, traits and trade-offs that have facilitated survival.
While it is true that members of most sexually reproducing species can be defined as either male or female, those who belong to the rest of the biological world are not so simply understood. Hermaphroditic creatures reproduce both as male and as female individuals, providing a fascinating glimpse into alternative sexual practices in nature and their ecological and evolutionary successes and failures. Eloquently written by an award-winning biologist and pioneer in molecular ecology, this primer on hermaphroditism traces the phenomenon throughout Earth's myriad species, accounting for the adaptive significance of alternative sexual systems. Accessible and richly illustrated, the text maps the evolutionary origins of hermaphroditism, as well as its historical instances and fictional representations, underscoring the relevance of dual sexuality to our biological, intellectual, and cultural making. John C. Avise describes the genetics, ecology, phylogeny, and natural history of hermaphroditic plants, fish, and invertebrate animals and details organisms that either reproduce simultaneously as male and female or switch routinely between one sex and the other. Filled with surprising creatures and compelling revelations, this textbook stands alone in its clear yet comprehensive treatment of hermaphroditism and its unique challenge to the supremacy of separate sexes.
Population genomics is a recently emerged discipline, which aims at understanding how evolutionary processes influence genetic variation across genomes. Today, in the era of cheaper next-generation sequencing, it is no longer as daunting to obtain whole genome data for any species of interest and population genomics is now conceivable in a wide range of fields, from medicine and pharmacology to ecology and evolutionary biology. However, because of the lack of reference genome and of enough a priori data on the polymorphism, population genomics analyses of populations will still involve higher constraints for researchers working on non-model organisms, as regards the choice of the genotyping/sequencing technique or that of the analysis methods. Therefore, Data Production and Analysis in Population Genomics purposely puts emphasis on protocols and methods that are applicable to species where genomic resources are still scarce. It is divided into three convenient sections, each one tackling one of the main challenges facing scientists setting up a population genomics study. The first section helps devising a sampling and/or experimental design suitable to address the biological question of interest. The second section addresses how to implement the best genotyping or sequencing method to obtain the required data given the time and cost constraints as well as the other genetic resources already available, Finally, the last section is about making the most of the (generally huge) dataset produced by using appropriate analysis methods in order to reach a biologically relevant conclusion. Written in the successful Methods in Molecular BiologyTM series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, advice on methodology and implementation, and notes on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, Data Production and Analysis in Population Genomics serves a wide readership by providing guidelines to help choose and implement the best experimental or analytical strategy for a given purpose.