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During the last 10 years numerical methods have begun to dominate paleontology. These methods now reach far beyond the fields of morphological and phylogenetic analyses to embrace biostratigraphy, paleobiogeography, and paleoecology. Paleontological Data Analysis explains the key numerical techniques in paleontology, and the methodologies employed in the software packages now available. Following an introduction to numerical methodologies in paleontology, and to univariate and multivariate techniques (including inferential testing), there follow chapters on morphometrics, phylogenetic analysis, paleobiogeography and paleoecology, time series analysis, and quantitative biostratigraphy Each chapter describes a range of techniques in detail, with worked examples, illustrations, and appropriate case histories Describes the purpose, type of data required, functionality, and implementation of each technique, together with notes of caution where appropriate The book and the accompanying PAST software package (see www.blackwellpublishing.com/hammer) are important investigative tools in a rapidly developing field characterized by many exciting new discoveries and innovative techniques An invaluable tool for all students and researchers involved in quantitative paleontology
PALEONTOLOGICAL DATA ANALYSIS An up-to-date edition of the indispensable guide to analysing paleontological data Paleontology has developed in recent decades into an increasingly data-driven discipline, which brings to bear a huge variety of statistical tools. Applying statistical methods to paleontological data requires a discipline-specific understanding of which methods and parameters are the most appropriate ones, and how to account for statistical bias inherent in the fossil record. By guiding the reader to these and other fundamental questions in the statistical analysis of fossilized specimens, Paleontological Data Analysis has become the standard text for anyone with an interest in quantitative analysis of the fossil record. Now fully updated to reflect the latest statistical methods and disciplinary advances, it is an essential tool for practitioners and students alike. Readers of the second edition of Paleontological Data Analysis readers will also find: New sections on machine learning, Bayesian inference, phylogenetic comparative methods, analysis of CT data, and much more New use cases and examples using PAST, R, and Python software packages Full color illustrations throughout Paleontological Data Analysis is ideal for paleontologists, evolutionary biologists, taxonomists, and students in any of these fields.
Numerical Palaeobiology Computer-Based Modelling and Analysis of Fossils and their Distributions Edited by David A.T. Harper University of Copenhagen, Denmark Microcomputers have become an everyday part of the palaeobiologists tool-kit. Moreover, there is now a wide range of computer software available to handle all sorts of palaeontological data and problems. This book, aimed at final year undergraduates, graduate students and professional palaeontologists, biologists and geologists, brings together the many strands of contemporary palaeontology through the medium of numeracy. It provides a comprehensive review, with applications, of the many computer based techniques available for the analysis and modelling of palaeontological data. The first part of the book covers classical phenetic taxonomy through cladistics and the computer-generated reconstructions of fossils to actual models for fossil growth. This leads onto distribution analysis and modelling of fossils in time and space. Detailed stratigraphical distributions of fossils are described in quantitative terms together with the larger-scale patterns in the history of life itself, while palaeoecology, palynofacies, trace fossils and palaeogeography are all introduced through a spectrum of numerical algorithms. The majority of the studies are linked to specific software packages and many are illustrated with case histories. Although there are a number of books available on computer modelling and data analysis in geology, no study has integrated the two with such a range of palaeontological subject material.
Phylogenetic analysis and morphometrics have been developed by biologists into rigorous analytic tools for testing hypotheses about the relationships between groups of species. This book applies these tools to paleontological data. The fossil record is our one true chronicle of the history of life, preserving a set of macroevolutionary patterns; thus various hypotheses about evolutionary processes can be tested in the fossil record using phylogentic analysis and morphometrics. The first book of its type, Fossils, Phylogeny, and Form will be useful in evolutionary biology, paleontology, systematics, evolutionary development, theoretical biology, biogeography, and zoology. It will also provide a practical, researcher-friendly gateway into computer-based phylogenetics and morphometrics.
Recent advances in statistical approaches called phylogenetic comparative methods (PCMs) have provided paleontologists with a powerful set of analytical tools for investigating evolutionary tempo and mode in fossil lineages. However, attempts to integrate PCMs with fossil data often present workers with practical challenges or unfamiliar literature. This Element presents guides to the theory behind and the application of PCMs with fossil taxa. Based on an empirical dataset of Paleozoic crinoids, example analyses are presented to illustrate common applications of PCMs to fossil data, including investigating patterns of correlated trait evolution and macroevolutionary models of morphological change. The authors emphasize the importance of accounting for sources of uncertainty and discuss how to evaluate model fit and adequacy. Finally, the authors discuss several promising methods for modeling heterogeneous evolutionary dynamics with fossil phylogenies. Integrating phylogeny-based approaches with the fossil record provides a rigorous, quantitative perspective on understanding key patterns in the history of life.
Presents principles of paleontology at an undergraduate level Emphasizes theory and concepts over details of morphology and the fossil record Profusely illustrated with photographs, charts, graphs, and tables
A collection of extended abstracts of papers presented at two workshops on the title subject.
Rereading the Fossil Record presents the first-ever historical account of the origin, rise, and importance of paleobiology, from the mid-nineteenth century to the late 1980s. Drawing on a wealth of archival material, David Sepkoski shows how the movement was conceived and promoted by a small but influential group of paleontologists and examines the intellectual, disciplinary, and political dynamics involved in the ascendency of paleobiology. By tracing the role of computer technology, large databases, and quantitative analytical methods in the emergence of paleobiology, this book also offers insight into the growing prominence and centrality of data-driven approaches in recent science.
The results suggest alternative weighting strategy in phylogenetic analysis and question current construction strategy of morphological character matrices. Chapter 3.3 makes further perspective about the application of information theory in paleontological study by treating it as a communication system. During the last two decades, the increase of data and appearance of novel methods have led many research fields transiting towards data driven. However, the construction of datasets, harnessing of novel data processing methods, and establishment of a general theory all indicate significant lags between paleontology and many other research fields. This thesis provides the very initial examples towards data-driven paleontological studies.