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The term ?stringology? is a popular nickname for text algorithms, or algorithms on strings. This book deals with the most basic algorithms in the area. Most of them can be viewed as ?algorithmic jewels? and deserve reader-friendly presentation. One of the main aims of the book is to present several of the most celebrated algorithms in a simple way by omitting obscuring details and separating algorithmic structure from combinatorial theoretical background. The book reflects the relationships between applications of text-algorithmic techniques and the classification of algorithms according to the measures of complexity considered. The text can be viewed as a parade of algorithms in which the main purpose is to discuss the foundations of the algorithms and their interconnections. One can partition the algorithmic problems discussed into practical and theoretical problems. Certainly, string matching and data compression are in the former class, while most problems related to symmetries and repetitions in texts are in the latter. However, all the problems are interesting from an algorithmic point of view and enable the reader to appreciate the importance of combinatorics on words as a tool in the design of efficient text algorithms.In most textbooks on algorithms and data structures, the presentation of efficient algorithms on words is quite short as compared to issues in graph theory, sorting, searching, and some other areas. At the same time, there are many presentations of interesting algorithms on words accessible only in journals and in a form directed mainly at specialists. This book fills the gap in the book literature on algorithms on words, and brings together the many results presently dispersed in the masses of journal articles. The presentation is reader-friendly; many examples and about two hundred figures illustrate nicely the behaviour of otherwise very complex algorithms.
The term “stringology” is a popular nickname for text algorithms, or algorithms on strings. This book deals with the most basic algorithms in the area. Most of them can be viewed as “algorithmic jewels” and deserve reader-friendly presentation. One of the main aims of the book is to present several of the most celebrated algorithms in a simple way by omitting obscuring details and separating algorithmic structure from combinatorial theoretical background. The book reflects the relationships between applications of text-algorithmic techniques and the classification of algorithms according to the measures of complexity considered. The text can be viewed as a parade of algorithms in which the main purpose is to discuss the foundations of the algorithms and their interconnections. One can partition the algorithmic problems discussed into practical and theoretical problems. Certainly, string matching and data compression are in the former class, while most problems related to symmetries and repetitions in texts are in the latter. However, all the problems are interesting from an algorithmic point of view and enable the reader to appreciate the importance of combinatorics on words as a tool in the design of efficient text algorithms.In most textbooks on algorithms and data structures, the presentation of efficient algorithms on words is quite short as compared to issues in graph theory, sorting, searching, and some other areas. At the same time, there are many presentations of interesting algorithms on words accessible only in journals and in a form directed mainly at specialists. This book fills the gap in the book literature on algorithms on words, and brings together the many results presently dispersed in the masses of journal articles. The presentation is reader-friendly; many examples and about two hundred figures illustrate nicely the behaviour of otherwise very complex algorithms.
This book constitutes the refereed proceedings of the 27th International Symposium on String Processing and Information Retrieval, SPIRE 2020, held in Orlando, FL, USA, in October 2020. The 17 full papers and 4 short papers presented in this volume were carefully reviewed and selected from 32 submissions. They cover topics such as: data structures; algorithms; information retrieval; compression; combinatorics on words; and computational biology.
This book constitutes the refereed proceedings of the 25th International Symposium on String Processing and Information Retrieval, SPIRE 2018, held in Lima, Peru, in October 2018. The 22 full papers and 6 short papers presented were carefully reviewed and selected from 51 submissions. They focus on fundamental studies on string processing and information retrieval, as well as on computational biology.
Thisvolumecontainsthe paperspresentedatthe 17thInternationalSymposium on String Processing and Information Retrieval (SPIRE 2010), held October 11-13, 2010 in Los Cabos, Mexico. The annual SPIRE conference provides researchers within ?elds related to string processing and/or information retrieval a possibility to present their or- inal contributions and to meet and talk with other researchers with similar - terests. The call for papers invited submissions related to string processing (d- tionary algorithms; text searching; pattern matching; text and sequence c- pression; automata-based string processing), information retrieval (information retrieval models; indexing; ranking and ?ltering; querying and interface design), natural language processing (text analysis; text mining; machine learning; - formation extraction; language models; knowledge representation), searchapp- cations and usage (cross-lingual information access systems; multimedia inf- mation access; digital libraries; collaborative retrieval and Web-related appli- tions; semi-structured data retrieval; evaluation), and interaction of biology and computation (DNA sequencing and applications in molecular biology; evolution andphylogenetics;recognitionofgenesandregulatoryelements;sequencedriven protein structure prediction). The papers presented at the symposium were selected from 109 submissions written by authors from 30 di'erent countries. Each submission was reviewed by at least three reviewers, with a maximum of ?ve reviews for particularly challengingpapers. The ProgramCommittee accepted 39 papers(corresponding to ?35% acceptance rate): 26 long papers and 13 short papers. In addition to these presentations, SPIRE 2010 also featured invited talks by Gonzalo Navarro (Universidad de Chile) and Mark Najork (Microsoft Research, USA).
This book constitutes the refereed proceedings of the 23rd International Symposium on String Processing and Information Retrieval, SPIRE 2016, held in Beppu, Japan, in October 2016. The 25 full papers presented were carefully reviewed and selected from 46 submissions. The focus of the papers is on fundamental studies of string processes and information retrieval and its applications for example to areas such as bioinformatics, Web mining and others.
This book constitutes the refereed proceedings of the 22nd International Symposium on String Processing and Information Retrieval, SPIRE 2015, held in London, UK, in September 2015. The 28 full and 6 short papers included in this volume were carefully reviewed and selected from 90 submissions. The papers cover research in all aspects of string processing, information retrieval, computational biology, pattern matching, semi-structured data, and related applications.
This volume of the Lecture Notes in Computer Science series provides a c- prehensive, state-of-the-art survey of recent advances in string processing and information retrieval. It includes invited and research papers presented at the 10th International Symposium on String Processing and Information Retrieval, SPIRE 2003, held in Manaus, Brazil. SPIRE 2003 received 54 full submissions from 17 countries, namely: - gentina(2), Australia(2), Brazil(9),Canada(1),Chile (4),Colombia(2),Czech Republic (1), Finland (10), France (1), Japan (2), Korea (5), Malaysia (1), P- tugal (2), Spain (6), Turkey (1), UK (1), USA (4) – the numbers in parentheses indicate the number of submissions from that country. In the nontrivial task of selecting the papers to be published in these proceedings we were fortunate to count on a very international program committee with 43 members, represe- ing all continents but one. These people, in turn, used the help of 40 external referees. During the review processall but a few papers had four reviewsinstead of the usual three, and at the end 21 submissions were accepted to be p- lished as full papers, yielding an acceptance rate of about 38%. An additional set of six short papers was also accepted. The technical program spans over the two well-de?ned scopes of SPIRE (string processing and information retrieval) with a number of papers also focusing on important application domains such as bioinformatics. SPIRE 2003 also features two invited speakers: Krishna Bharat (Google, Inc. ) and Joa ̃o Meidanis (State Univ. of Campinas and Scylla Bioinformatics).
This book constitutes the refereed proceedings of the 11th International Conference on String Processing and Information Retrieval, SPIRE 2004, held in Padova, Italy, in October 2004. The 28 revised full papers and 16 revised short papers presented were carefully reviewed and selected from 123 submissions. The papers address current issues in string pattern searching and matching, string discovery, data compression, data mining, text mining, machine learning, information retrieval, digital libraries, and applications in various fields, such as bioinformatics, speech and natural language processing, Web links and communities, and multilingual data.
This book constitutes the refereed proceedings of the 19th International Symposium on String Processing and Information Retrieval, SPIRE 2012, held in Cartagena de Indias, Colombia, in October 2012. The 26 full papers, 13 short papers, and 3 keynote speeches were carefully reviewed and selected from 81 submissions. The following topics are covered: fundamentals algorithms in string processing and information retrieval; SP and IR techniques as applied to areas such as computational biology, DNA sequencing, and Web mining.