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This text updates the current understanding of the important biophysical aspects in living systems. Efforts are made to precisely furnish major biophysical aspects associated with structural and functional aspects, starting with water, macromolecules and membranes up to organ systems. Twenty independent research groups, actively involved in unravelling various aspects of living systems through a multidisciplinary approach using biophysics along with biochemistry and molecular biology have shared their experiences with examples in the book. Three chapters on neurobiology have also been included.
This classic and highly influential text presents a uniquely comprehensive view of the field of biophysical ecology. In its analytical interpretation of the ecological responses of plants and animals to their environments, it draws upon studies of energy exchange, gas exchange, and chemical kinetics. The first four chapters offer a preliminary treatment of the applications of biophysical ecology, discussing energy and energy budgets and their applications to plants and animals, and defining radiation laws and units. Succeeding chapters concern the physical environment, covering the topics of radiation, convection, conduction, and evaporation. The spectral properties of radiation and matter are reviewed, along with the geometrical, instantaneous, daily, and annual amounts of both shortwave and longwave radiation. The book concludes with more elaborate analytical methods for the study of photosynthesis in plants and energy budgets in animals, in addition to animal and plant temperature responses. This text will prove of value to students and environmental researchers from a variety of fields, particularly ecology, agronomy, forestry, botany, and zoology.
This volume contains papers based on the workshop OC Energy and Information Transfer in Biological Systems: How Physics Could Enrich Biological UnderstandingOCO, held in Italy in 2002. The meeting was a forum aimed at evaluating the potential and outlooks of a modern physics approach to understanding and describing biological processes, especially regarding the transition from the microscopic chemical scenario to the macroscopic functional configurations of living matter. In this frame some leading researchers presented and discussed several basic topics, such as the photon interaction with biological systems also from the viewpoint of photon information processes and of possible applications; the influence of electromagnetic fields on the self-organization of biosystems including the nonlinear mechanism for energy transfer and storage; and the influence of the structure of water on the properties of biological matter."
Beginning with a new essay, "Levels of Life and Death," Tibor Gánti develops three general arguments about the nature of life. In "The Nature of the Living State," Professor Gánti answers Francis Crick's puzzles about "life itself," offering a set of reflections on the parameters of the problems to be solved in origins of life research and, more broadly, in the search for principles governing the living state in general. "The Principle of Life" describes in accessible language Gánti's chief insight about the organization of living systems-his theory of the "chemoton," or chemical automaton. The simplest chemoton model of the living state consists of three chemically coupled subsystems: an autocatalytic metabolism, a genetic molecule and a membrane. Gánti offers a fresh approach to the ancient problem of "life criteria," articulating a basic philosophy of the units of life applicable to the deepest theoretical considerations of genetics, chemical synthesis, evolutionary biology and the requirements of an "exact theoretical biology." New essays by Eörs Szathmáry and James Griesemer on the biological and philosophical significance of Gánti's work of thirty years indicate not only the enduring theoretical significance, but also the continuing relevance and heuristic power of Gánti's insights. New endnotes by Szathmáry and Griesemer bring this legacy into dialogue with current thought in biology and philosophy. Gánti's chemoton model reveals the fundamental importance of chemistry for biology and philosophy. Gánti's technical innovation - cycle stoichiometry - at once captures the fundamental fact that biological systems are organized in cycles and at the same time offers a way to understand what it is to think chemically. Perhaps most fundamentally, Gánti's chemoton model avoids dualistic thinking enforced by the dichotomies of modern biology: germ and soma, gene and character, genotype and phenotype.
A hands-on guide to devising, designing and analyzing simulations of biophysical processes for applications in biological and biomedical sciences. Practical examples are given throughout, representing real-world case studies of key application areas, and all data and complete codes for simulation and data analysis are provided online.
In the ten years since the publication of Modern Soil Microbiology, the study of soil microbiology has significantly changed, both in the understanding of the diversity and function of soil microbial communities and in research methods. Ideal for students in a variety of disciplines, this second edition provides a cutting-edge examination of a fascinating discipline that encompasses ecology, physiology, genetics, molecular biology, and biotechnology, and makes use of biochemical and biophysical approaches. The chapters cover topics ranging from the fundamental to the applied and describe the use of advanced methods that have provided a great thrust to the discipline of soil microbiology. Using the latest molecular analyses, they integrate principles of soil microbiology with novel insights into the physiology of soil microorganisms. The authors discuss the soil and rhizosphere as habitats for microorganisms, then go on to describe the different microbial groups, their adaptive responses, and their respective processes in interactive and functional terms. The book highlights a range of applied aspects of soil microbiology, including the nature of disease-suppressive soils, the use of biological control agents, biopesticides and bioremediation agents, and the need for correct statistics and experimentation in the analyses of the data obtained from soil systems.
This book advances the knowledge of the mechanism development of a lived organism during its lifetime through the normal stationary state and quasi-stationary pathologic state from the viewpoints of biochemistry, biophysics, and thermodynamics. It explores the possibility of estimating experimental results from the three points of view, giving a broad perspective on the interaction between an organism and its environment. The book also describes the biophysical and biochemical mechanisms’ maintenance stability of internal energy according to the First and Second Law of Thermodynamics.
The book explains self-assembly and order on the basis of a biophysical mechanism using energy. Biological molecules and structures have extraordinary polar and polarization properties. Even the thermal vibrations are accompanied by polarization waves generating oscillating electric fields capable of mediation of long range interactions. In particular, the cytoskeleton is an important structure of cellular organization. On account of non-linear properties energy supplied from metabolic sources (e.g. from GTP to the microtubules and from ATP to the actin filaments) can shift the vibrations in biological systems far from thermodynamic equilibrium and excite coherent states. The generated coherent electric field can be essential for creation and maintenance of order. The book presents the hypothesis that protein phosphorylation can control the coherent vibrations whose disturbances may be connected with certain properties of malignant cells. The text of the book is accessible to biophysicists, biologists, biochemists, and to other scientists working in the interdisciplinary area between biology, chemistry, and physics.
The growing impact of nonlinear science on biology and medicine is fundamentally changing our view of living organisms and disease processes. This book introduces the application to biomedicine of a broad range of interdisciplinary concepts from nonlinear dynamics, such as self-organization, complexity, coherence, stochastic resonance, fractals and chaos. It comprises 18 chapters written by leading figures in the field and covers experimental and theoretical research, as well as the emerging technological possibilities such as nonlinear control techniques for treating pathological biodynamics, including heart arrhythmias and epilepsy. This book will attract the interest of professionals and students from a wide range of disciplines, including physicists, chemists, biologists, sensory physiologists and medical researchers such as cardiologists, neurologists and biomedical engineers.
This book presents concise descriptions and analysis of the classical and modern models used in mathematical biophysics. The authors ask the question "what new information can be provided by the models that cannot be obtained directly from experimental data?" Actively developing fields such as regulatory mechanisms in cells and subcellular systems and electron transport and energy transport in membranes are addressed together with more classical topics such as metabolic processes, nerve conduction and heart activity, chemical kinetics, population dynamics, and photosynthesis. The main approach is to describe biological processes using different mathematical approaches necessary to reveal characteristic features and properties of simulated systems. With the emergence of powerful mathematics software packages such as MAPLE, Mathematica, Mathcad, and MatLab, these methodologies are now accessible to a wide audience.