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Autotrophic and methylotrophic microorganisms are able to grow at the expense of one-carbon compounds (e.g. carbon dioxide, formaldehyde) as the principal carbon sources for the synthesis of cell material, using light, inorganic compounds or one-carbon compounds as energy sources. The study of the special adaptations required in aerobic and anaerobic microorganisms to sustain an autotrophic or methylotrophic mode of life is a fascinating field of research for scientists from various disciplines. Current research efforts not only focus on fundamental aspects, i.e. metabolic pathways and their regulation, ecology, energy conversion and genetics, but also the possible application of these organisms, in waste water treatment, degradation of xenobiotics, single-cell protein production, as biocatalysts for the production of fine chemicals, draws strong attention. The aim of this series is to provide annual reviews on the biochemistry, physiology, ecology, genetics, and application of microbial autotrophs and methylotrophs. The scope of the series includes all aspects of the biology of these microbes, and will deal with phototrophic and chemolithotrophic prokaryotic autotrophs, carboxydobacteria, acetogenic-, methanogenic- and methylotrophic bacteria, as well as methylotrophic eukaryotes. The exciting advances made in recent years in the study of these organisms is reflected in the chapters of this first volume which have been written by experts in the field. We would like to express our sincere thanks to all the contributors for their stimulating and comprehensive chapters.
Bacteria change the surface of the Earth. All kinds of bacteria reside in the biosphere, and although sometimes they may cause damage, they also help in cleaning the surface of the Earth and in the circulation of various substances. Chemolithoautotrophic bacteria in particular have a unique and intimate relationship with inorganic substances and human beings. This book covers in detail advances in the biochemistry and physiology of several chemolithoautotrophic bacteria as well as their relationship to certain environments. Included are recent findings regarding the oxidation mechanisms of ammonia, nitrite, sulfur compounds, and ferrous iron by special bacteria. The characteristics of many cytochromes are described to further advance the understanding of bacterial oxidation systems of inorganic compounds. Applications of bacteria, such as in sewage treatment and in biohydometallurgy, among others, are detailed, and bacteria considered closest to the origins of life are discussed in the final chapter.
Microbial Diversity in the Genomic Era presents insights on the techniques used for microbial taxonomy and phylogeny, along with their applications and respective pros and cons. Though many advanced techniques for the identification of any unknown bacterium are available in the genomics era, a far fewer number of the total microbial species have been discovered and identified to date. The assessment of microbial taxonomy and biosystematics techniques discovered and practiced in the current genomics era with suitable recommendations is the prime focus of this book. - Discusses the techniques used for microbial taxonomy and phylogeny with their applications and respective pros and cons - Reviews the evolving field of bacterial typing and the genomic technologies that enable comparative analysis of multiple genomes and the metagenomes of complex microbial environments - Provides a uniform, standard methodology for species designation
Bacterial Metabolism focuses on metabolic events that occur in microorganisms, as well as photosynthesis, oxidation, polysaccharide formation, and homofermentation. The book first discusses the thermodynamics of biological reactions, photosynthesis and photometabolism, and chemosynthesis. Free energy, photosynthesis, enzymes, and terminology in bacterial metabolism are elaborated. The manuscript then examines acetic acid bacteria and lactic acid bacteria. Discussions focus on lactate, ethanol, glucose, and glycerol metabolism, glycol oxidation, homofermentation, polysaccharide formation, and electron transport systems. The publication takes a look at pseudomonadaceae and nitrogen metabolism as an energy source for anaerobic microorganisms. Topics include metabolism of pairs of amino acids, single amino acid metabolism, oxidation of glycolate and malonate, and oxygenases. The book is a dependable source of information for readers interested in bacterial metabolism.
Streams around the world flow toward the sea in floodplains. All along this transit, there is exchange of water between the stream itself and the surrounding sediments which form the floodplain. Many chemical, biological, and geological processes occur when water moves back and forth between streams and these flood plain sediments. Streams and Groundwaters focuses on the consequences of water flow between streams, their underlying sediments, and surrounding landscapes. Certain to appeal to anyone interested in stream ecology, the management of stream ecosystems, or landscape ecology, this volume should become a oft-opened reference.
The fourth edition of Soil Microbiology, Ecology and Biochemistry updates this widely used reference as the study and understanding of soil biota, their function, and the dynamics of soil organic matter has been revolutionized by molecular and instrumental techniques, and information technology. Knowledge of soil microbiology, ecology and biochemistry is central to our understanding of organisms and their processes and interactions with their environment. In a time of great global change and increased emphasis on biodiversity and food security, soil microbiology and ecology has become an increasingly important topic. Revised by a group of world-renowned authors in many institutions and disciplines, this work relates the breakthroughs in knowledge in this important field to its history as well as future applications. The new edition provides readable, practical, impactful information for its many applied and fundamental disciplines. Professionals turn to this text as a reference for fundamental knowledge in their field or to inform management practices. - New section on "Methods in Studying Soil Organic Matter Formation and Nutrient Dynamics" to balance the two successful chapters on microbial and physiological methodology - Includes expanded information on soil interactions with organisms involved in human and plant disease - Improved readability and integration for an ever-widening audience in his field - Integrated concepts related to soil biota, diversity, and function allow readers in multiple disciplines to understand the complex soil biota and their function
State-of-the-art update on methods and protocols dealing with the detection, isolation and characterization of macromolecules and their hosting organisms that facilitate nitrification and related processes in the nitrogen cycle as well as the challenges of doing so in very diverse environments. Provides state-of-the-art update on methods and protocols Deals with the detection, isolation and characterization of macromolecules and their hosting organisms Deals with the challenges of very diverse environments
Recent determination of genome sequences for a wide range of bacteria has made in-depth knowledge of prokaryotic metabolic function essential in order to give biochemical, physiological, and ecological meaning to the genomic information. Clearly describing the important metabolic processes that occur in prokaryotes under different conditions and in different environments, this advanced text provides an overview of the key cellular processes that determine bacterial roles in the environment, biotechnology, and human health. Prokaryotic structure is described as well as the means by which nutrients are transported into cells across membranes. Glucose metabolism through glycolysis and the TCA cycle are discussed, as well as other trophic variations found in prokaryotes, including the use of organic compounds, anaerobic fermentation, anaerobic respiratory processes, and photosynthesis. The regulation of metabolism through control of gene expression and control of the activity of enzymes is also covered, as well as survival mechanisms used under starvation conditions.