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This is a practical guide to tomographic image reconstruction with projection data, with strong focus on Computed Tomography (CT) and Positron Emission Tomography (PET). Classic methods such as FBP, ART, SIRT, MLEM and OSEM are presented with modern and compact notation, with the main goal of guiding the reader from the comprehension of the mathematical background through a fast-route to real practice and computer implementation of the algorithms. Accompanied by example data sets, real ready-to-run Python toolsets and scripts and an overview the latest research in the field, this guide will be invaluable for graduate students and early-career researchers and scientists in medical physics and biomedical engineering who are beginners in the field of image reconstruction. A top-down guide from theory to practical implementation of PET and CT reconstruction methods, without sacrificing the rigor of mathematical background Accompanied by Python source code snippets, suggested exercises, and supplementary ready-to-run examples for readers to download from the CRC Press website Ideal for those willing to move their first steps on the real practice of image reconstruction, with modern scientific programming language and toolsets Daniele Panetta is a researcher at the Institute of Clinical Physiology of the Italian National Research Council (CNR-IFC) in Pisa. He earned his MSc degree in Physics in 2004 and specialisation diploma in Health Physics in 2008, both at the University of Pisa. From 2005 to 2007, he worked at the Department of Physics "E. Fermi" of the University of Pisa in the field of tomographic image reconstruction for small animal imaging micro-CT instrumentation. His current research at CNR-IFC has as its goal the identification of novel PET/CT imaging biomarkers for cardiovascular and metabolic diseases. In the field micro-CT imaging, his interests cover applications of three-dimensional morphometry of biosamples and scaffolds for regenerative medicine. He acts as reviewer for scientific journals in the field of Medical Imaging: Physics in Medicine and Biology, Medical Physics, Physica Medica, and others. Since 2012, he is adjunct professor in Medical Physics at the University of Pisa. Niccolò Camarlinghi is a researcher at the University of Pisa. He obtained his MSc in Physics in 2007 and his PhD in Applied Physics in 2012. He has been working in the field of Medical Physics since 2008 and his main research fields are medical image analysis and image reconstruction. He is involved in the development of clinical, pre-clinical PET and hadron therapy monitoring scanners. At the time of writing this book he was a lecturer at University of Pisa, teaching courses of life-sciences and medical physics laboratory. He regularly acts as a referee for the following journals: Medical Physics, Physics in Medicine and Biology, Transactions on Medical Imaging, Computers in Biology and Medicine, Physica Medica, EURASIP Journal on Image and Video Processing, Journal of Biomedical and Health Informatics.
This is a practical guide to tomographic image reconstruction with projection data, with strong focus on Computed Tomography (CT) and Positron Emission Tomography (PET). Classic methods such as FBP, ART, SIRT, MLEM and OSEM are presented with modern and compact notation, with the main goal of guiding the reader from the comprehension of the mathematical background through a fast-route to real practice and computer implementation of the algorithms. Accompanied by example data sets, real ready-to-run Python toolsets and scripts and an overview the latest research in the field, this guide will be invaluable for graduate students and early-career researchers and scientists in medical physics and biomedical engineering who are beginners in the field of image reconstruction. A top-down guide from theory to practical implementation of PET and CT reconstruction methods, without sacrificing the rigor of mathematical background Accompanied by Python source code snippets, suggested exercises, and supplementary ready-to-run examples for readers to download from the CRC Press website Ideal for those willing to move their first steps on the real practice of image reconstruction, with modern scientific programming language and toolsets Daniele Panetta is a researcher at the Institute of Clinical Physiology of the Italian National Research Council (CNR-IFC) in Pisa. He earned his MSc degree in Physics in 2004 and specialisation diploma in Health Physics in 2008, both at the University of Pisa. From 2005 to 2007, he worked at the Department of Physics "E. Fermi" of the University of Pisa in the field of tomographic image reconstruction for small animal imaging micro-CT instrumentation. His current research at CNR-IFC has as its goal the identification of novel PET/CT imaging biomarkers for cardiovascular and metabolic diseases. In the field micro-CT imaging, his interests cover applications of three-dimensional morphometry of biosamples and scaffolds for regenerative medicine. He acts as reviewer for scientific journals in the field of Medical Imaging: Physics in Medicine and Biology, Medical Physics, Physica Medica, and others. Since 2012, he is adjunct professor in Medical Physics at the University of Pisa. Niccolò Camarlinghi is a researcher at the University of Pisa. He obtained his MSc in Physics in 2007 and his PhD in Applied Physics in 2012. He has been working in the field of Medical Physics since 2008 and his main research fields are medical image analysis and image reconstruction. He is involved in the development of clinical, pre-clinical PET and hadron therapy monitoring scanners. At the time of writing this book he was a lecturer at University of Pisa, teaching courses of life-sciences and medical physics laboratory. He regularly acts as a referee for the following journals: Medical Physics, Physics in Medicine and Biology, Transactions on Medical Imaging, Computers in Biology and Medicine, Physica Medica, EURASIP Journal on Image and Video Processing, Journal of Biomedical and Health Informatics.
This book contains a selection of communications presented at the Third International Meeting on Fully Three-Dimensional Image Reconstruction in Radiology and Nuclear Medicine, held 4-6 July 1995 at Domaine d' Aix-Marlioz, Aix-Ies-Bains, France. This nice resort provided an inspiring environment to hold discussions and presentations on new and developing issues. Roentgen discovered X-ray radiation in 1895 and Becquerel found natural radioactivity in 1896 : a hundred years later, this conference was focused on the applications of such radiations to explore the human body. If the physics is now fully understood, 3D imaging techniques based on ionising radiations are still progressing. These techniques include 3D Radiology, 3D X-ray Computed Tomography (3D-CT), Single Photon Emission Computed Tomography (SPECT), Positron Emission Tomography (PET). Radiology is dedicated to morphological imaging, using transmitted radiations from an external X-ray source, and nuclear medicine to functional imaging, using radiations emitted from an internal radioactive tracer. In both cases, new 3D tomographic systems will tend to use 2D detectors in order to improve the radiation detection efficiency. Taking a set of 2D acquisitions around the patient, 3D acquisitions are obtained. Then, fully 3D image reconstruction algorithms are required to recover the 3D image of the body from these projection measurements.
"Medical Image Reconstruction: A Conceptual Tutorial" introduces the classical and modern image reconstruction technologies, such as two-dimensional (2D) parallel-beam and fan-beam imaging, three-dimensional (3D) parallel ray, parallel plane, and cone-beam imaging. This book presents both analytical and iterative methods of these technologies and their applications in X-ray CT (computed tomography), SPECT (single photon emission computed tomography), PET (positron emission tomography), and MRI (magnetic resonance imaging). Contemporary research results in exact region-of-interest (ROI) reconstruction with truncated projections, Katsevich's cone-beam filtered backprojection algorithm, and reconstruction with highly undersampled data with l0-minimization are also included. This book is written for engineers and researchers in the field of biomedical engineering specializing in medical imaging and image processing with image reconstruction. Gengsheng Lawrence Zeng is an expert in the development of medical image reconstruction algorithms and is a professor at the Department of Radiology, University of Utah, Salt Lake City, Utah, USA.
This book introduces the classical and modern image reconstruction technologies. It covers topics in two-dimensional (2D) parallel-beam and fan-beam imaging, three-dimensional (3D) parallel ray, parallel plane, and cone-beam imaging. Both analytical and iterative methods are presented. The applications in X-ray CT, SPECT (single photon emission computed tomography), PET (positron emission tomography), and MRI (magnetic resonance imaging) are discussed. Contemporary research results in exact region-of-interest (ROI) reconstruction with truncated projections, Katsevich’s cone-beam filtered backprojection algorithm, and reconstruction with highly under-sampled data are included. The last chapter of the book is devoted to the techniques of using a fast analytical algorithm to reconstruct an image that is equivalent to an iterative reconstruction. These techniques are the author’s most recent research results. This book is intended for students, engineers, and researchers who are interested in medical image reconstruction. Written in a non-mathematical way, this book provides an easy access to modern mathematical methods in medical imaging. Table of Content: Chapter 1 Basic Principles of Tomography 1.1 Tomography 1.2 Projection 1.3 Image Reconstruction 1.4 Backprojection 1.5 Mathematical Expressions Problems References Chapter 2 Parallel-Beam Image Reconstruction 2.1 Fourier Transform 2.2 Central Slice Theorem 2.3 Reconstruction Algorithms 2.4 A Computer Simulation 2.5 ROI Reconstruction with Truncated Projections 2.6 Mathematical Expressions (The Fourier Transform and Convolution , The Hilbert Transform and the Finite Hilbert Transform , Proof of the Central Slice Theorem, Derivation of the Filtered Backprojection Algorithm , Expression of the Convolution Backprojection Algorithm, Expression of the Radon Inversion Formula ,Derivation of the Backprojection-then-Filtering Algorithm Problems References Chapter 3 Fan-Beam Image Reconstruction 3.1 Fan-Beam Geometry and Point Spread Function 3.2 Parallel-Beam to Fan-Beam Algorithm Conversion 3.3 Short Scan 3.4 Mathematical Expressions (Derivation of a Filtered Backprojection Fan-Beam Algorithm, A Fan-Beam Algorithm Using the Derivative and the Hilbert Transform) Problems References Chapter 4 Transmission and Emission Tomography 4.1 X-Ray Computed Tomography 4.2 Positron Emission Tomography and Single Photon Emission Computed Tomography 4.3 Attenuation Correction for Emission Tomography 4.4 Mathematical Expressions Problems References Chapter 5 3D Image Reconstruction 5.1 Parallel Line-Integral Data 5.2 Parallel Plane-Integral Data 5.3 Cone-Beam Data (Feldkamp's Algorithm, Grangeat's Algorithm, Katsevich's Algorithm) 5.4 Mathematical Expressions (Backprojection-then-Filtering for Parallel Line-Integral Data, Filtered Backprojection Algorithm for Parallel Line-Integral Data, 3D Radon Inversion Formula, 3D Backprojection-then-Filtering Algorithm for Radon Data, Feldkamp's Algorithm, Tuy's Relationship, Grangeat's Relationship, Katsevich’s Algorithm) Problems References Chapter 6 Iterative Reconstruction 6.1 Solving a System of Linear Equations 6.2 Algebraic Reconstruction Technique 6.3 Gradient Descent Algorithms 6.4 Maximum-Likelihood Expectation-Maximization Algorithms 6.5 Ordered-Subset Expectation-Maximization Algorithm 6.6 Noise Handling (Analytical Methods, Iterative Methods, Iterative Methods) 6.7 Noise Modeling as a Likelihood Function 6.8 Including Prior Knowledge 6.9 Mathematical Expressions (ART, Conjugate Gradient Algorithm, ML-EM, OS-EM, Green’s One-Step Late Algorithm, Matched and Unmatched Projector/Backprojector Pairs ) 6.10 Reconstruction Using Highly Undersampled Data with l0 Minimization Problems References Chapter 7 MRI Reconstruction 7.1 The 'M' 7.2 The 'R' 7.3 The 'I'; (To Obtain z-Information, x-Information, y-Information) 7.4 Mathematical Expressions Problems References Indexing
This book constitutes the refereed proceedings of the Third International Workshop on Machine Learning for Medical Reconstruction, MLMIR 2020, held in conjunction with MICCAI 2020, in Lima, Peru, in October 2020. The workshop was held virtually. The 15 papers presented were carefully reviewed and selected from 18 submissions. The papers are organized in the following topical sections: deep learning for magnetic resonance imaging and deep learning for general image reconstruction.
PET and SPECT are two of today's most important medical-imaging methods, providing images that reveal subtle information about physiological processes in humans and animals. Emission Tomography: The Fundamentals of PET and SPECT explains the physics and engineering principles of these important functional-imaging methods. The technology of emission tomography is covered in detail, including historical origins, scientific and mathematical foundations, imaging systems and their components, image reconstruction and analysis, simulation techniques, and clinical and laboratory applications. The book describes the state of the art of emission tomography, including all facets of conventional SPECT and PET, as well as contemporary topics such as iterative image reconstruction, small-animal imaging, and PET/CT systems. This book is intended as a textbook and reference resource for graduate students, researchers, medical physicists, biomedical engineers, and professional engineers and physicists in the medical-imaging industry. Thorough tutorials of fundamental and advanced topics are presented by dozens of the leading researchers in PET and SPECT. SPECT has long been a mainstay of clinical imaging, and PET is now one of the world's fastest growing medical imaging techniques, owing to its dramatic contributions to cancer imaging and other applications. Emission Tomography: The Fundamentals of PET and SPECT is an essential resource for understanding the technology of SPECT and PET, the most widely used forms of molecular imaging.*Contains thorough tutorial treatments, coupled with coverage of advanced topics*Three of the four holders of the prestigious Institute of Electrical and Electronics Engineers Medical Imaging Scientist Award are chapter contributors*Include color artwork
This book constitutes the refereed joint proceedings of the International Workshop on Computational Methods for Molecular Imaging, CMMI 2017, the International Workshop on Reconstruction and Analysis of Moving Body Organs, RAMBO 2017, and the International Stroke Workshop: Imaging and Treatment Challenges, SWITCH 2017, held in conjunction with the 20th International Conference on Medical Imaging and Computer-Assisted Intervention, MICCAI 2017, in Québec City, QC, Canada, in September 2017. The 5 full papers presented at FIFI 2017, the 9 full papers presented at RAMBO 2017, and the 4 full papers presented at SWITCH 2017 were carefully reviewed and selected. The CMMI papers cover various areas from image synthesis to data analysis and from clinical diagnosis to therapy individualization, using molecular imaging modalities PET, SPECT, PET/CT, SPECT/CT, and PET/MR. The RAMBO papers present research from both academia and industry, They are organized into the categories "registration and tracking" and "image reconstruction and information retrieval" while application areas include cardiac, pulmonal, abdominal, fetal, and renal imaging. The SWITCH papers focus on CT(A)-based quantitative imaging biomarkers for stroke.
Images from CT, MRI, PET, and other medical instrumentation have become central to the radiotherapy process in the past two decades, thus requiring medical physicists, clinicians, dosimetrists, radiation therapists, and trainees to integrate and segment these images efficiently and accurately in a clinical environment. Image Processing in Radiation
This book provides readers with a superior understanding of the mathematical principles behind imaging.